liom_toolkit.utils package

Submodules

• liom_toolkit.utils.conversion module
  • convert_hdf5_to_nifti()
  • convert_hdf5_to_zarr()
  • convert_nifti_to_zarr()
  • convert_nrrd_to_zarr()
  • create_full_zarr_volume()
  • create_multichannel_zarr()
  • load_hdf5()
  • save_zarr()
• liom_toolkit.utils.dask_client module
  • DaskClientManager
    • DaskClientManager.get_client()
    • DaskClientManager.set_client()
• liom_toolkit.utils.io module
  • CustomScaler
    • CustomScaler.anti_aliasing
    • CustomScaler.current_scale
    • CustomScaler.do_upscale
    • CustomScaler.input_layer
    • CustomScaler.nearest()
    • CustomScaler.order
    • CustomScaler.original_image
    • CustomScaler.to_down_scale
    • CustomScaler.to_up_scale
  • convert_dask_to_ants()
  • create_and_write_mask()
  • create_mask_from_zarr()
  • create_transformation_dict()
  • extract_zarr_to_png()
  • generate_axes_dict()
  • generate_label_color_dict_allen()
  • generate_label_color_dict_mask()
  • load_allen_template()
  • load_ants_image_from_node()
  • load_node_by_name()
  • load_zarr()
  • load_zarr_image_from_node()
  • load_zarr_transform_from_node()
  • save_atlas_to_zarr()
  • save_label_to_zarr()
  • set_physical_shape()
• liom_toolkit.utils.utils module
  • clean_dir()
  • convert_to_png_for_saving()
  • fix_even()

Module contents