Index

C

construct_reference_space() (in module liom_toolkit.utils.allen_sdk)

construct_reference_space_cache() (in module liom_toolkit.utils.allen_sdk) convert_allen_nrrd_to_ants() (in module liom_toolkit.utils.allen_sdk)

D

DaskClientManager (class in liom_toolkit.utils.dask_client)

download_allen_atlas() (in module liom_toolkit.utils.allen_sdk) download_allen_template() (in module liom_toolkit.utils.allen_sdk)

E

erode_mask() (in module liom_toolkit.segmentation.plane_segmentation)

estimate_tissue_mask() (in module liom_toolkit.segmentation.plane_segmentation)

F

fill_holes_2d_3d() (in module liom_toolkit.segmentation.volume_segmentation)

frangi_filter() (in module liom_toolkit.segmentation.plane_segmentation)

G

generate_label_color_dict_allen() (in module liom_toolkit.utils.allen_sdk)

get_client() (liom_toolkit.utils.dask_client.DaskClientManager method)

L

li_threshold_image() (in module liom_toolkit.segmentation.plane_segmentation) liom_toolkit module liom_toolkit.segmentation.plane_segmentation module liom_toolkit.segmentation.volume_segmentation module

liom_toolkit.utils.allen_sdk module liom_toolkit.utils.dask_client module load_allen_template() (in module liom_toolkit.utils.allen_sdk)

M

module liom_toolkit liom_toolkit.segmentation.plane_segmentation liom_toolkit.segmentation.volume_segmentation liom_toolkit.utils.allen_sdk liom_toolkit.utils.dask_client

R

remove_small_structures() (in module liom_toolkit.segmentation.plane_segmentation)

S

sauvola_threshold_image() (in module liom_toolkit.segmentation.plane_segmentation) segment_2d_image() (in module liom_toolkit.segmentation.plane_segmentation)

segment_3d_brain() (in module liom_toolkit.segmentation.volume_segmentation) set_client() (liom_toolkit.utils.dask_client.DaskClientManager method) subtract_background() (in module liom_toolkit.segmentation.plane_segmentation)