liom_toolkit package

Subpackages

• liom_toolkit.conversion package
  • Submodules
    • liom_toolkit.conversion.conversion module
  • Module contents
• liom_toolkit.registration package
  • Submodules
    • liom_toolkit.registration.register module
    • liom_toolkit.registration.templating module
  • Module contents
• liom_toolkit.segmentation package
  • Subpackages
    • liom_toolkit.segmentation.vseg package
      • Submodules
      • Module contents
  • Submodules
    • liom_toolkit.segmentation.plane_segmentation module
      • erode_mask()
      • estimate_tissue_mask()
      • frangi_filter()
      • li_threshold_image()
      • remove_small_structures()
      • sauvola_threshold_image()
      • segment_2d_image()
      • subtract_background()
    • liom_toolkit.segmentation.stats module
    • liom_toolkit.segmentation.volume_segmentation module
      • fill_holes_2d_3d()
      • segment_3d_brain()
  • Module contents
• liom_toolkit.utils package
  • Submodules
    • liom_toolkit.utils.allen_sdk module
      • construct_reference_space()
      • construct_reference_space_cache()
      • convert_allen_nrrd_to_ants()
      • download_allen_atlas()
      • download_allen_template()
      • generate_label_color_dict_allen()
      • load_allen_template()
    • liom_toolkit.utils.dask_client module
      • DaskClientManager
    • liom_toolkit.utils.io module
    • liom_toolkit.utils.utils module
  • Module contents
• liom_toolkit.visualization package
  • Submodules
    • liom_toolkit.visualization.slice_extraction module
  • Module contents

Module contents